[Bioperl-l] problem with bioperl install
cjfields at illinois.edu
Fri May 29 22:40:49 EDT 2009
You aren't running as superuser:
> term dump: > > dhcp-0019353043-25-35:BioPerl-1.6.0 kristinafontanez
You'll need to run cpan using 'sudo cpan' if installing modules
anywhere requiring superuser permissions.
On May 29, 2009, at 5:10 PM, Sendu Bala wrote:
> Kristina Fontanez wrote:
>> Hello everyone-
>> Sendu - I took your advice but doing Install Bundle::CPAN did not
>> take care of the dependencies. It still failed. See attached txt
>> file with my terminal output. Does anyone have any idea how this
>> might be?
> From reading the output it seems like perhaps you don't have 'make'
> or there is something wrong when using it. If you're on a mac you
> may need to install the dev tools. Someone else want to jump in here
> with advice?
> Also, check your CPAN configuration to ensure it is trying to use
> the correct make commands. ('o conf' etc.)
>> If I wanted to wipe all perl from my computer and simply start
>> over, how might this be accomplished?
> Don't do that. At least not until you know you have a working make
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