[Bioperl-l] A question about iBio::Index: and its correct use

Hotz, Hans-Rudolf hrh at fmi.ch
Thu Nov 5 11:02:48 EST 2009




Jluis

> -Then I´ll beg you to take a look at my scripts, because I don´t seem to
> catch the bug...

you haven't attached/included any scripts, have you?


Anyway, have you considered using BLAST indices (created with the additional
flag "-o") together with the tool 'fastacmd' (which also included in the
NCBI blast binaries) as a simple (and very fast) alternative for fetching
sequences.


Regards, Hans





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