[Bioperl-l] how to get the protein sequences from DNA sequences around novel SNPs?

Guangchun Song gc11song at gmail.com
Mon Nov 9 13:08:48 EST 2009


I'm new bioperl user.  I' working on a project: To determine the
status of all tutative SNPs such as non-synonymous vs. synonymous, and
predict the tranlational effect of non-synonymous mutations as benign
or malicious.  I'm trying to use bioperl to get the DNA sequence and
translate to protein sequence for the SNPs that are in gene's coding
region.  Could someone tell me how to do it?


-Guangchun Song

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