[Bioperl-l] Bio::Index::GenBank - by organism?

Jay Hannah jay at jays.net
Mon Nov 16 17:02:10 EST 2009

On Nov 10, 2009, at 12:50 PM, Jason Stajich wrote:
> You might also look at what mygenbank does:
> http://homepage.mac.com/iankorf/mygenbank.html

It appears, perhaps, that BioSQL can provide *foo* searching like so:


 SELECT DISTINCT include.ncbi_taxon_id FROM taxon
    INNER JOIN taxon AS include ON
      (include.left_value BETWEEN taxon.left_value
        AND taxon.right_value)
 WHERE taxon.taxon_id IN
   (SELECT taxon_id FROM taxon_name
    WHERE name LIKE '%fungi%')

So I think we're going to chase that for a while.

I didn't see a *foo* search in MyGenBank?



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