[Bioperl-l] Bio::DB::Fasta

Mark A. Jensen maj at fortinbras.us
Tue Nov 24 17:18:51 EST 2009

The code (method index_dir() ) seems to expect all the fasta files to be 
contained in that directory. Looks hairy; what about creating symlinks to your 
fasta files in a /tmp subdir and calling new() with that subdir?
----- Original Message ----- 
From: "Smithies, Russell" <Russell.Smithies at agresearch.co.nz>
To: "'bioperl-l'" <bioperl-l at bioperl.org>
Sent: Tuesday, November 24, 2009 5:04 PM
Subject: [Bioperl-l] Bio::DB::Fasta

> Is there any way to pass a filename to Bio::DB::Fasta for the location of 
> where to write the directory.index?
> It's writing in the same dir as the fasta but I'd rather have it write in /tmp 
> as it's part of a web app.
> Thanx,
> Russell
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