[Bioperl-l] question for all regarding a sam-based Bio::Assembly::IO

Mark A. Jensen maj at fortinbras.us
Wed Nov 25 12:25:30 EST 2009


I'm working on an Assembly::IO class for sam alignments.
I'm currently making a decision about handling multiple reference sequences:
would you prefer that next_assembly() return an assembly that covers all reference
sequences, or that next_assembly iterates over each reference sequence?
(Or both?)

thanks for your input-

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