November 2009 Archives by thread

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...

Starting: Sun Nov 1 23:47:15 EST 2009
Ending: Mon Nov 30 12:41:44 EST 2009
Messages: 179

• [Bioperl-l] annotations   Mark A. Jensen
  • [Bioperl-l] annotations   Chris Fields
• [Bioperl-l] render_blast problem   Kie Kyon Huang
  • [Bioperl-l] render_blast problem   Peter
    • [Bioperl-l] render_blast problem   Chris Fields
• [Bioperl-l] render_blast problem   Peter
• [Bioperl-l] svn errors?   Aaron Mackey
  • [Bioperl-l] svn errors?   Chris Fields
  • [Bioperl-l] svn errors?   Mauricio Herrera Cuadra
• [Bioperl-l] Trouble parsing PSI-BLAST   Sharma, Rachita
  • [Bioperl-l] Trouble parsing PSI-BLAST   Chris Fields
• [Bioperl-l] Trouble parsing PSI-BLAST   Rachita Sharma
  • [Bioperl-l] Trouble parsing PSI-BLAST   Chris Fields
• [Bioperl-l] version of ExtUtils::Manifest too strict?   Alex Lancaster
  • [Bioperl-l] version of ExtUtils::Manifest too strict?   Chris Fields
    • [Bioperl-l] version of ExtUtils::Manifest too strict?   Alex Lancaster
      • [Bioperl-l] version of ExtUtils::Manifest too strict?   Chris Fields
• [Bioperl-l] Trouble retrieving multiple sequences from NCBI in a single list query   jluis.lavin at unavarra.es
  • [Bioperl-l] Trouble retrieving multiple sequences from NCBI in a single list query   Dave Messina
    • [Bioperl-l] Trouble retrieving multiple sequences from NCBI in a single list query   jluis.lavin at unavarra.es
      • [Bioperl-l] Trouble retrieving multiple sequences from NCBI in a single list query   Dave Messina
      • [Bioperl-l] Trouble retrieving multiple sequences from NCBI ina single list query   Mark A. Jensen
  • [Bioperl-l] Trouble retrieving multiple sequences from NCBI in a single list query   Hotz, Hans-Rudolf
    • [Bioperl-l] Trouble retrieving multiple sequences from NCBI in asingle list query   jluis.lavin at unavarra.es
• [Bioperl-l] Bio::Graphics and picture format   Emanuele Osimo
  • [Bioperl-l] Bio::Graphics and picture format   Scott Cain
• [Bioperl-l] SwissProt and Subcellular localization information   Daniel Gaston
• [Bioperl-l] SwissProt and Subcellular localization information   Daniel Gaston
• [Bioperl-l] A question about iBio::Index: and its correct use   jluis.lavin at unavarra.es
  • [Bioperl-l] A question about iBio::Index: and its correct use   Mark A. Jensen
  • [Bioperl-l] A question about iBio::Index: and its correct use   Hotz, Hans-Rudolf
    • [Bioperl-l] A question about iBio::Index: and its correct use   jluis.lavin at unavarra.es
      • [Bioperl-l] A question about iBio::Index: and its correct use   Florent Angly
      • [Bioperl-l] A question about iBio::Index: and its correct use   jluis.lavin at unavarra.es
• [Bioperl-l] [Fwd: Re: A question about iBio::Index: and its correct use]   jluis.lavin at unavarra.es
  • [Bioperl-l] [Fwd: Re: A question about iBio::Index: and its correct use]   Mark A. Jensen
    • [Bioperl-l] [Fwd: Re: A question about iBio::Index: and its correct use]   jluis.lavin at unavarra.es
      • [Bioperl-l] [Fwd: Re: A question about iBio::Index: and its correct use]   Mark A. Jensen
      • [Bioperl-l] [Fwd: Re: A question about iBio::Index: and itscorrect use]   jluis.lavin at unavarra.es
      • [Bioperl-l] [Fwd: Re: A question about iBio::Index: and itscorrect use]   Jason Stajich
      • [Bioperl-l] [Fwd: Re: A question about iBio::Index: anditscorrect use]   jluis.lavin at unavarra.es
• [Bioperl-l] Bio::SeqIO::genbank.pm   valiente at lsi.upc.edu
• [Bioperl-l] Bioperl   Mark A. Jensen
• [Bioperl-l] Function that determines serious mutations   Robert Bradbury
  • [Bioperl-l] Function that determines serious mutations   Alden Huang
    • [Bioperl-l] Function that determines serious mutations   Robert Bradbury
• [Bioperl-l] StandAloneBlast Unallowed parameter   kleenix
• [Bioperl-l] Parsing BLAST out file to HTML. How to change the description's name of each hit?   Xiaoyu Liang
  • [Bioperl-l] Parsing BLAST out file to HTML. How to change thedescription's name of each hit?   Mark A. Jensen
• [Bioperl-l] arguments to call back functions in GBrowse2   Daniel Lang
• [Bioperl-l] GuessSeqFormat: fastq?   Mark A. Jensen
  • [Bioperl-l] GuessSeqFormat: fastq?   Mark A. Jensen
• [Bioperl-l] Retrieving link to protein from PubChem   saikari keitele
• [Bioperl-l] [bioperl newbie] Retrieving link to protein from PubChem   saikari keitele
  • [Bioperl-l] [bioperl newbie] Retrieving link to protein from PubChem   Chris Fields
    • [Bioperl-l] [bioperl newbie] Retrieving link to protein from PubChem   saikari keitele
      • [Bioperl-l] [bioperl newbie] Retrieving link to protein from PubChem   saikari keitele
      • [Bioperl-l] [bioperl newbie] Retrieving link to protein from PubChem   Chris Fields
• [Bioperl-l] how to get the protein sequences from DNA sequences around novel SNPs?   Guangchun Song
  • [Bioperl-l] how to get the protein sequences from DNA sequences around novel SNPs?   Robert Bradbury
    • [Bioperl-l] how to get the protein sequences from DNA sequencesaround novel SNPs?   Mark A. Jensen
    • [Bioperl-l] how to get the protein sequences from DNA sequences around novel SNPs?   Chris Fields
• [Bioperl-l] Bio::Index::GenBank - by organism?   Jay Hannah
  • [Bioperl-l] Bio::Index::GenBank - by organism?   Chris Fields
    • [Bioperl-l] Bio::Index::GenBank - by organism?   Jason Stajich
      • [Bioperl-l] Bio::Index::GenBank - by organism?   Jay Hannah
    • [Bioperl-l] Bio::Index::GenBank - by organism?   Jay Hannah
• [Bioperl-l] problem with alignments and sequence locations   Steffen Heyne
  • [Bioperl-l] problem with alignments and sequence locations   Chris Fields
• [Bioperl-l] Invitation to connect on LinkedIn   Vesselin Baev
• [Bioperl-l] Maq assembly wrapper ready for beta testing   Mark A. Jensen
• [Bioperl-l] Polyproteins, ribo slippage, and mat_peptide in viruses?   Chris Larsen
• [Bioperl-l] highest PAML version supported?   Dave Messina
  • [Bioperl-l] highest PAML version supported?   Jason Stajich
    • [Bioperl-l] highest PAML version supported?   Dave Messina
• [Bioperl-l] January GMOD meeting announcement   Scott Cain
• [Bioperl-l] Bio::Graphics::Panel question   Xiaoyu Liang
  • [Bioperl-l] Bio::Graphics::Panel question   Kevin Brown
• [Bioperl-l] Bio::TreeIO, Root-tip branch lengths   Jun Inoue
  • [Bioperl-l] Bio::TreeIO, Root-tip branch lengths   Mark A. Jensen
• [Bioperl-l] Problems with bioperl in Mac OS X 10.6 (Perl 5.10.0)   rbogard
  • [Bioperl-l] Problems with bioperl in Mac OS X 10.6 (Perl 5.10.0)   Emanuele Osimo
    • [Bioperl-l] Problems with bioperl in Mac OS X 10.6 (Perl 5.10.0)   rbogard
      • [Bioperl-l] Problems with bioperl in Mac OS X 10.6 (Perl 5.10.0)   Mark A. Jensen
      • [Bioperl-l] Problems with bioperl in Mac OS X 10.6 (Perl 5.10.0)   Chris Fields
      • [Bioperl-l] Problems with bioperl in Mac OS X 10.6 (Perl 5.10.0)   rbogard
    • [Bioperl-l] Problems with bioperl in Mac OS X 10.6 (Perl 5.10.0)   Chris Fields
  • [Bioperl-l] Problems with bioperl in Mac OS X 10.6 (Perl 5.10.0)   rbogard
• [Bioperl-l] Regarding Bio::TreeIO Object   Aneesh K
  • [Bioperl-l] Regarding Bio::TreeIO Object   Roy Chaudhuri
  • [Bioperl-l] Regarding Bio::TreeIO Object   Jason Stajich
• [Bioperl-l] FW: Bio::Graphics::Panel question   Kevin Brown
  • [Bioperl-l] FW: Bio::Graphics::Panel question   Lincoln Stein
• [Bioperl-l] bioperl-ext installation issue   Paolo Pavan
• [Bioperl-l] Regarding Bio::TreeIO Object   Roy Chaudhuri
  • [Bioperl-l] Regarding Bio::TreeIO Object   Mark A. Jensen
• [Bioperl-l] how to visualize multiple sequences alignments   Xiaoyu Liang
  • [Bioperl-l] how to visualize multiple sequences alignments   Jason Stajich
    • [Bioperl-l] how to visualize multiple sequences alignments   Dave Clements
• [Bioperl-l] DANGER: hacking of bioperl wiki?   Andrew Grimm
  • [Bioperl-l] DANGER: hacking of bioperl wiki?   Mark A. Jensen
    • [Bioperl-l] DANGER: hacking of bioperl wiki?   Mauricio Herrera Cuadra
• [Bioperl-l] accessing EMBL database   Sandipan Chowdhury
  • [Bioperl-l] accessing EMBL database   Mark A. Jensen
    • [Bioperl-l] accessing EMBL database   Dave Messina
      • [Bioperl-l] accessing EMBL database   Mark A. Jensen
      • [Bioperl-l] verbosity and error stack, was accessing EMBL database   Chris Fields
      • [Bioperl-l] verbosity and error stack, was accessing EMBL database   Mark A. Jensen
      • [Bioperl-l] verbosity and error stack, was accessing EMBL database   Dave Messina
      • [Bioperl-l] verbosity and error stack, was accessing EMBL database   Chris Fields
      • [Bioperl-l] verbosity and error stack, was accessing EMBL database   Dave Messina
  • [Bioperl-l] accessing EMBL database   Hotz, Hans-Rudolf
    • [Bioperl-l] accessing EMBL database   Chris Fields
• [Bioperl-l] Remote blast   Roopa Raghuveer
  • [Bioperl-l] Remote blast   Roy Chaudhuri
• [Bioperl-l] strand in Bio::SearchIO when parsing fasta35 output   michael watson (IAH-C)
  • [Bioperl-l] strand in Bio::SearchIO when parsing fasta35 output   Chris Fields
• [Bioperl-l] Installing Bio-perl on dreamhost via CPAN   Chu, Roy
  • [Bioperl-l] Installing Bio-perl on dreamhost via CPAN   Spiros Denaxas
  • [Bioperl-l] Installing Bio-perl on dreamhost via CPAN   Charles Plessy
    • [Bioperl-l] Installing Bio-perl on dreamhost via CPAN   Chris Fields
      • [Bioperl-l] Installing Bio-perl on dreamhost via CPAN   Chu, Roy
      • [Bioperl-l] Installing Bio-perl on dreamhost via CPAN   Chris Fields
      • [Bioperl-l] Installing Bio-perl on dreamhost via CPAN   Mark A. Jensen
      • [Bioperl-l] Installing Bio-perl on dreamhost via CPAN   Charles Plessy
• [Bioperl-l] Remote blast   Roopa Raghuveer
  • [Bioperl-l] Remote blast   Dave Messina
• [Bioperl-l] Bio::DB::EUtilities question   Alessandra
  • [Bioperl-l] Bio::DB::EUtilities question   Robert Bradbury
    • [Bioperl-l] Bio::DB::EUtilities question   Chris Fields
• [Bioperl-l] gravatars on the wiki   Mark A. Jensen
• [Bioperl-l] Excessive CPU use by various Bioperl sites   Robert Bradbury
  • [Bioperl-l] Excessive CPU use by various Bioperl sites   Chris Fields
    • [Bioperl-l] Excessive CPU use by various Bioperl sites   Sean Davis
      • [Bioperl-l] Excessive CPU use by various Bioperl sites   Chris Fields
• [Bioperl-l] ohlohers   Mark A. Jensen
• [Bioperl-l] BioPerl on FLOSS Weekly   Chris Fields
  • [Bioperl-l] BioPerl on FLOSS Weekly   Adam Sjøgren
    • [Bioperl-l] BioPerl on FLOSS Weekly   Chris Fields
      • [Bioperl-l] BioPerl on FLOSS Weekly   Mark A. Jensen
• [Bioperl-l] Problems with Genbank Proteins File   Rodrigo Jardim
  • [Bioperl-l] Problems with Genbank Proteins File   Peter
• [Bioperl-l] building samtools/Bio::DB::Sam on cygwin   Mark A. Jensen
• [Bioperl-l] Installing Bio-perl on dreamhost via CPAN   Jonathan Cline
• [Bioperl-l] Bio::Tools::Run::Cap3 usage question   Paolo Pavan
  • [Bioperl-l] Bio::Tools::Run::Cap3 usage question   Florent Angly
• [Bioperl-l] Bio::DB::Fasta   Smithies, Russell
  • [Bioperl-l] Bio::DB::Fasta   Mark A. Jensen
• [Bioperl-l] Bio::DB::Fasta   Smithies, Russell
  • [Bioperl-l] Bio::DB::Fasta   Mark A. Jensen
• [Bioperl-l] Remote Blast - same script but different results   Roy
• [Bioperl-l] question for all regarding a sam-based Bio::Assembly::IO   Mark A. Jensen
• [Bioperl-l] How to parse BLAST output - all hits of each query in new file   Tim
  • [Bioperl-l] How to parse BLAST output - all hits of each query innew file   Mark A. Jensen
    • [Bioperl-l] How to parse BLAST output - all hits of each queryinnew file   Mark A. Jensen
  • [Bioperl-l] How to parse BLAST output - all hits of each query in new file   Smithies, Russell
• [Bioperl-l] How to parse different (fasta) files   Tim
• [Bioperl-l] DAS workshop 7th-9th April 2010   Jonathan Warren
  • [Bioperl-l] [DAS] DAS workshop 7th-9th April 2010   Suzanna Lewis
• [Bioperl-l] How to parse BLAST output - all hits of each queryinnew file   Tim Koehler
  • [Bioperl-l] How to parse BLAST output - all hits of eachqueryinnew file   Mark A. Jensen
    • [Bioperl-l] How to parse BLAST output - all hits of eachqueryinnew file   Jason Stajich
• [Bioperl-l] question about a Bio::Tree::Tree method   Jason Stajich
• [Bioperl-l] Bio::Assembly::IO::sam is alpha   Mark A. Jensen
• [Bioperl-l] [DAS] DAS workshop 7th-9th April 2010   Mauricio Herrera Cuadra
• [Bioperl-l] BioPerl "guts" question regarding forked processes   Robert Bradbury
  • [Bioperl-l] BioPerl "guts" question regarding forked processes   Bryan Bishop
• [Bioperl-l] More general Bio::Assembly::Contig question (was Bio::Tools::Run::Cap3 usage question)   Paolo Pavan
  • [Bioperl-l] More general Bio::Assembly::Contig question (was Bio::Tools::Run::Cap3 usage question)   Florent Angly
• [Bioperl-l] Linking of two cgi scripts   Roopa Raghuveer
  • [Bioperl-l] Linking of two cgi scripts   Spiros Denaxas
• [Bioperl-l] Run wrappers for BWA and Samtools   Mark A. Jensen
• [Bioperl-l] HOWTO copyright policy vs FDL on wiki   Mark A. Jensen
  • [Bioperl-l] HOWTO copyright policy vs FDL on wiki   Brian Osborne
• [Bioperl-l] using bioperl to compare sequences   Ben Bimber
• [Bioperl-l] HOWTO copyright policy vs FDL on wiki   Mark A. Jensen
  • [Bioperl-l] HOWTO copyright policy vs FDL on wiki   Brian Osborne
• [Bioperl-l] How to parse BLAST output - all hits of each queryinnew file   Tim Koehler
• [Bioperl-l] How to parse BLAST output - all hits of each queryinnew file   Mark A. Jensen

Last message date: Mon Nov 30 12:41:44 EST 2009
Archived on: Wed Dec 2 09:15:32 EST 2009

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...