[Bioperl-l] SQLite for BioPerl indexing

Chris Fields cjfields at illinois.edu
Fri Oct 9 22:13:35 EDT 2009

I'll check it out, but it prob. won't be until Monday.


On Oct 9, 2009, at 6:28 PM, Mark A. Jensen wrote:

> Hi All,
> My AnyDBM_File hack to allow ActiveState a workaround
> for DB_File (see http://lists.open-bio.org/pipermail/bioperl-l/2009-September/031309.html 
> )
> turned into a "BioPerl Autumn of Code" project.
> Bio::DB::SQLite_File is a nearly complete emulation of DB_File,
> down to the access functions (get(), put(), del(), seq()) and
> user-provided comparision functions.
> If you're interested, please see
> http://www.bioperl.org/wiki/HOWTO:SQLite_for_BioPerl_indexing
> for exhausting discussion and download. I would REALLY
> appreciate a core dev/power user or two checking out the
> anydbm-branch branch and performing a straight build sequence,
> and letting me know how it goes. See the wiki for those paths.
> Thanks--
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