[Bioperl-l] How to parse DBLINK Project linetype in Genbank file

Chris Stubben stubben at lanl.gov
Wed Oct 21 11:29:03 EDT 2009

I have some Genbank files (from genome sequences) with a DBLINK line type
listing the Entrez genome project id.  Is there a way to parse this line?  
I can't seem to find it among the Annotation objects using bioperl 1.6.0
(printing all annotations or just dblinks below)

my @annotations = $so->annotation->get_Annotations('dblink');  # nothing

LOCUS       NC_001664             159322 bp    DNA     linear   VRL
DEFINITION  Human herpesvirus 6A, complete genome.
VERSION     NC_001664.2  GI:224020395
DBLINK      Project:14462
SOURCE      Human herpesvirus 6 (HHV-6A)


Chris Stubben
View this message in context: http://www.nabble.com/How-to-parse-DBLINK-Project-linetype-in-Genbank-file-tp25994776p25994776.html
Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.

More information about the Bioperl-l mailing list