[Bioperl-l] EXAMPLE: Polyproteins, ribo slippage, and mat_peptide in viruses?

Chris Larsen clarsen at vecna.com
Tue Oct 27 15:47:27 EDT 2009

My bad...thanks everyone.

An example of a virus that does this is in order so we don't have to  
do this in our heads. There's no slippage in this isolate per se,  
however the main problem of generating component *.faa from  
polyprotein still exists.


> For instance, check this:
> http://www.ncbi.nlm.nih.gov/nuccore/NC_001959
> You may recall some cruise where half the ship threw up. YAY
> norovirus. Lets take that as a useful problem to address solutions to.
> No mat_peptide sequence is given. How to get that?

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