[Bioperl-l] Support for KEGG

ARTHUR GOLDBERG artg at cs.nyu.edu
Wed Apr 7 12:14:55 EDT 2010


Does Bioperl support Kegg non-sequence data such as pathways?  
(Bio::SeqIO::kegg supports KEGG sequence data.)
For example, Kegg's web services interface provides loads of access to  
Kegg pathway, gene and enzyme info. However, even it doesn't support  
things like the pathway hierarchy distributed in files in ftp://ftp.genome.jp/pub/kegg/brite/organisms/ 


Arthur P. Goldberg, PhD

Research Scientist in Bioinformatics
Plant Systems Biology Laboratory

Visiting Academic
Computer Science Department
Courant Institute of Mathematical Sciences

artg at cs.nyu.edu
New York University
212 995-4918
Coruzzi Lab
8th Floor Silver Building
1009 Silver Center
100 Washington Sq East
New York NY 10003-6688

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