[Bioperl-l] parsing blast reports

Joan Segura Mora umjsm at leeds.ac.uk
Wed Apr 7 12:23:49 EDT 2010

Dear bioperl developers,

I am using bioperl to parse a Blast report. I am using the object
Bio::SearchIO. In all the examples that I have found the constructor
method read the report from a file, EX:

my $in = new Bio::SearchIO(-format => 'blast', 
                           -file   => 'report.bls'); 

I would like to know if the constructor can get the blast report from a perl variable ($report_bls)

thanks a lot,

Joan Segura Mora
PhD Research Fellow
Leeds Institute of Molecular Medicine
Section of Experimental Therapeutics
Wellcome Trust Brenner Building
St. James's University Hospital
Leeds LS9 7TF
United Kingdom

phone: +44 (0) 113 3438817

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