[Bioperl-l] Problems getting bioperl to run on SnowLeopard

Mgavi Brathwaite lsbrath at gmail.com
Fri Apr 9 17:29:25 EDT 2010


I am having trouble running bioperl-1.6.1 in SnowLeopard. I have moved the
BIoPerl-1.6.1 folder to  /System/Library/Perl/5.10.0/.  I logged in as su
and added  export PERL5LIB =  /System/Library/Perl/5.10.0/BioPerl-1.6.1/Bio/
to my .profile  file. When I run my script I get the following error

Can't locate Bio/SeqIO.pm in @INC (@INC contains: /sw/lib/perl5
/sw/lib/perl5/darwin /Library/Perl/Updates/5.10.0
/System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level
/Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level
/Network/Library/Perl/5.10.0 /Network/Library/Perl
/System/Library/Perl/Extras/5.10.0 .) at project_example.pl line 4.
BEGIN failed--compilation aborted at project_example.pl line 4.

Can anyone help me get up and running?


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