[Bioperl-l] question about Bio::Tools::Run::StandAloneBlast

Chris Fields cjfields at illinois.edu
Wed Apr 14 09:16:43 EDT 2010

I'm assuming that we will slowly be deprecating use of those modules as users migrate over to BLAST+.  I'm not sure, but I don't think NCBI will support legacy BLAST that much longer.


On Apr 14, 2010, at 8:03 AM, Dave Messina wrote:

> Hi Dimitar,
>> May be the problem is that i am using BLAST+ package where theres no 'blastall' at all and 'tblastn' and all programs are standalone.
> That's exactly the problem.
> This is what you're looking for:
> http://www.bioperl.org/wiki/HOWTO:BlastPlus
> Dave
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