[Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command that is executed?

Mark A. Jensen maj at fortinbras.us
Tue Apr 20 20:11:49 EDT 2010


By all means patch it in, I say--
----- Original Message ----- 
From: "Dan Kortschak" <dan.kortschak at adelaide.edu.au>
To: <bimber at wisc.edu>
Cc: <bioperl-l at lists.open-bio.org>
Sent: Tuesday, April 20, 2010 5:24 PM
Subject: Re: [Bioperl-l] Bio::Tools::Run::WrapperBase: Capture the command that 
is executed?


> Hi Ben,
>
> Yeah, that's a good point. An attribute and accessor pair would do the
> job: keep the last command string sent to IPC::Run and allow the user to
> see this if they want.
>
> Is there any reason this would be objected to as an addition to the
> CommandExts and WrapperBase APIs?
>
> Dan
>
> On Tue, 2010-04-20 at 12:00 -0400, bimber at wisc.edu wrote:
>> Dan,
>>
>> Beyond debugging, I could see cases where logging it would be useful.
>> Technically capturing the set of params given to CommandExts does more
>> or less the same thing, but sometimes giving people the exact command
>> makes it a little more transparent.  You are right that it's not
>> absolutely essential.
>>
>> -Ben
>>
> -- 
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