[Bioperl-l] Stem-and-leaf plot for fastq scores in a file?

Albert Vilella avilella at gmail.com
Thu Apr 22 11:10:34 EDT 2010


Hi,

Maybe someone has figured this script out, so I am asking the list:

Given a fastq file with all reads of identical length like this one
(presumably not huge):
http://www.ebi.ac.uk/~avilella/example.fastq

how can I produce a stem-and-leaf plot (or stemplot) of the qscores?

Something simple that prints out the plot to the terminal,

Cheers,

Albert.


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