[Bioperl-l] Blasting multiple protein sequences.
cseligman at earthlink.net
Mon Apr 26 20:56:01 EDT 2010
I am a student and new to BioPerl.
I have a fasta formatted file with 17 protein sequences in it and I would
like to blast them all.
My problem is that only the first one gets blasted.
Can anyone make a suggestion?
Thanks in advance - Chet
Here's my code:
my $fastafilename = 'protein.fa';
# reads an array of sequences
my @seq_object_array = read_all_sequences($fastafilename,'fasta');
# BLAST a sequence (assumes an internet connection)
my $blast_report = blast_sequence(@seq_object_array);
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