[Bioperl-l] about gene "boundaries"

Dimitar Kenanov dimitark at bii.a-star.edu.sg
Wed Apr 28 09:17:47 EDT 2010


Hello guys,
i have a question about gene "boundaries". Is there some module in 
BioPerl which can help me extract the DNA sequence from a genomic DB 
(from specific chromosome). I have my human genome in a local DB and 
some "from-to" data sets corresponding to different chromosomes. So i 
want to get the DNA seqs for these from-to's. I know i can do that the 
normal way but if there is a way to do it with BioPerl it will be more 
consistent with the rest of the code.

Thanks for any tips :)

Cheers
Dimitar

-- 
Dimitar Kenanov
Postdoctoral research fellow
Protein Sequence Analysis Group
Bioinformatics Institute
A*STAR, Singapore
email: dimitark at bii.a-star.edu.sg
tel: +65 6478 8514



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