[Bioperl-l] out of memory issue
Russell.Smithies at agresearch.co.nz
Wed Apr 28 17:02:15 EDT 2010
You mean why would you want to do that on a Mac?
> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Andreas Kahari
> Sent: Thursday, 29 April 2010 3:50 a.m.
> To: shalabh sharma
> Cc: bioperl-l
> Subject: Re: [Bioperl-l] out of memory issue
> On Wed, Apr 28, 2010 at 10:13:11AM -0400, shalabh sharma wrote:
> > Hi All,
> > I am trying to make a hash of 38 Million ids but every time i get
> > following message :
> Why would you want to do that? What is the application and would you
> be able to solve it by either re-ordering the things you doing or doing
> things in batches?
> > perl(191) malloc: *** mmap(size=16777216) failed (error code=12)
> > *** error: can't allocate region
> > *** set a breakpoint in malloc_error_break to debug
> > Out of memory!
> > I am working on MacOX 10.5.8 with 4GB of memory.
> > I would really appreciate if anyone can help me out.
> > Thanks
> > Shalabh
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> Andreas Kähäri, Ensembl Software Developer
> European Bioinformatics Institute (EMBL-EBI)
> Wellcome Trust Genome Campus, Hinxton
> Cambridge CB10 1SD, United Kingdom
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
More information about the Bioperl-l