[Bioperl-l] out of memory issue

Chris Fields cjfields at illinois.edu
Wed Apr 28 18:16:34 EDT 2010


Agreed.  I use SQLite quite frequently for bits like this. In fact, Mark wrote up a DB_File-like interface for SQLite along those lines, with a tied interface:

http://search.cpan.org/perldoc?SQLite_File

chris

On Apr 28, 2010, at 5:05 PM, Dan Kortschak wrote:

> Have you considered using a backend database for this? It will scale
> better if you want to generalise the problem.
> 
> Dan
> 
> On Wed, 2010-04-28 at 12:00 -0400, shalabh.sharma7 at gmail.com wrote:
>> Hi,
>> @ Andreas: Actually that is kind of search thing, i am making that
>> hash so i
>> can search values out of it.
>> I will try to look what Dave and Mark has suggested , if it doesn't
>> work
>> then i will use some other alternative like batches.
>> 
>> Thanks
>> Shalabh
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l




More information about the Bioperl-l mailing list