[Bioperl-l] clustalw to maf format
shalabh.sharma7 at gmail.com
Mon Aug 2 15:44:35 EDT 2010
I am trying to convert clustalw to maf format.
I am trying to use AlignIO for that but its not working.
Its giving me the following error:
EXCEPTION Bio::Root::NotImplemented -------------
MSG: Abstract method "Bio::AlignIO::maf::write_aln" is not implemented by
This is not your fault - author of Bio::AlignIO::maf should be blamed!
STACK Bio::AlignIO::maf::write_aln /Library/Perl/5.8.8/Bio/AlignIO/
STACK Bio::AlignIO::PRINT /Library/Perl/5.8.8/Bio/AlignIO.pm:492
STACK toplevel msf2mafy.pl:11
Is there any other way i can convert clustalw to maf?
I would really appreciate if anyone can help me out.
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