[Bioperl-l] clustalw to maf format

Peter biopython at maubp.freeserve.co.uk
Mon Aug 2 17:24:09 EDT 2010


On Mon, Aug 2, 2010 at 8:44 PM, shalabh sharma
<shalabh.sharma7 at gmail.com> wrote:
> Hi,
>    I am trying to convert clustalw to maf format.
> I am trying to use AlignIO for that but its not working.

Could you tell us why you have to use maf format?
I'm curious because all of the phylogenetics tools I've
had to work with personally will take some other format
which is more widely supported (e.g. FASTA, PFAM,
ClustalW, PHYLIP, ...).

Peter



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