[Bioperl-l] Getting pileup consensus from BAM files using Bio::DB::Sam

Peter biopython at maubp.freeserve.co.uk
Tue Aug 3 13:06:46 EDT 2010


On Tue, Aug 3, 2010 at 5:57 PM, Lincoln Stein <lincoln.stein at gmail.com> wrote:
> Samtools is running MAQ on the pileup. You could either implement MAQ in
> perl, or come up with your own consensus caller.
>
> Lincoln

See also: http://seqanswers.com/forums/showthread.php?t=6241


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