[Bioperl-l] MUMmer parser work

Chris Fields cjfields at illinois.edu
Thu Aug 5 23:13:51 EDT 2010


Just so you know, there is a proposed MUMmer AlignIO parser that John (genehack) is planning on trying to incorporate in:


It currently lacks significant tests, so feel free to chip in there as needed.


On Aug 5, 2010, at 8:06 PM, Dan Kortschak wrote:

> Hello Everyone,
> I've just noticed the absence of a MUMmer parser and thought that it
> might be a worthwhile contribution to bioperl-run (I won't be able to
> start on this for a while, but given Mark's excellent work on
> CommandExts, it should take too long to get up when I do have time). Has
> anyone made any effort in this direction that I would be stepping on, or
> if they have left it, that I could pick up to shorten the work time?
> cheers
> Dan
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