[Bioperl-l] Add sequence feature

Jessica Sun jessica.sun at gmail.com
Fri Aug 13 11:27:10 EDT 2010


unfortunately. I want to add the feature to the sequence object I got from
the Genbank file, I do not mind to save a new genbank file but these new
genbank file contains the original genbank format and info I got plus the
new feature tags I need to added to. Any quick solution to this?

thx

Jessica



On Fri, Aug 13, 2010 at 11:21 AM, Roy Chaudhuri <roy.chaudhuri at gmail.com>wrote:

> Hi Jessica.
>
> You need to use Bio::SeqIO to read in the GenBank file to a BioPerl
> sequence object, and to write your new GenBank file:
> http://www.bioperl.org/wiki/HOWTO:SeqIO
>
> To add a new feature follow the instructions here:
>
> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation#Building_Your_Own_Sequences
>
> (except that you are adding the feature to the sequence object you got from
> the Genbank file, not a new Bio::Seq object).
>
> Cheers.
> Roy.
>
>
> On 13/08/2010 16:06, Jessica Sun wrote:
>
>> Does anyone knows how to open a genbank file, add new feature and then
>> save
>> a new genbank
>> file with new feature added in bioperl ?
>>
>> thx
>>
>>
>


-- 
Jessica Jingping Sun


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