[Bioperl-l] bp_seqfeature_load.pl fails on Mac os. Please help.
buiduyminh at gmail.com
Fri Aug 20 17:29:00 EDT 2010
I am trying to load my GFF file to mysql database but I got this error
when I ran the bp_seqfeature_load.pl ( bioperl 1.6.1 on MAC)
[BioComplexity-5:/usr/local/bin] minh% perl bp_seqfeature_load.pl
install_driver(mysql) failed: Can't locate DBD/mysql.pm in @INC (@INC
contains: /sw/lib/perl5 /sw/lib/perl5/darwin
/System/Library/Perl/Extras/5.8.6 /Library/Perl/5.8.1 .) at (eval 44)
Perhaps the DBD::mysql perl module hasn't been fully installed,
or perhaps the capitalisation of 'mysql' isn't right.
Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge.
at /Library/Perl/5.8.6/Bio/DB/SeqFeature/Store/DBI/mysql.pm line 212
I am using MAC OSX version 10.4.10 and MAMP? Isnt it the
"/Library/Perl/5.8.6" already in @INC? What am I missing?
I have been googling this error for a few hours. I also install
Bioperl and reinstall DBD::mysql using CPAN. It still doesnt work..
Here is my $PERL5LIB: /sw/lib/perl5:/sw/lib/perl5/darwin/
I really need help on this.
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