[Bioperl-l] getting DNA sequence for exon features from GFF

Dave Messina David.Messina at sbc.su.se
Thu Aug 26 04:53:48 EDT 2010

Admittedly i'm not up on the latest uses of GFF, but as far as I know, GFF is an annotation format only — it does not contain the actual sequence.

Have you looked in your GFF file to see if there are nucleotides in there?


On Aug 26, 2010, at 10:29, kanmani radha wrote:

> Hi All,
> I would like to get the DNA seq from GFF file. I'm using Bio::Tools::GFF
> module. I could get everything else but not the DNA seq.

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