August 2010 Archives by thread

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Starting: Sun Aug 1 15:17:14 EDT 2010
Ending: Tue Aug 31 11:01:59 EDT 2010
Messages: 198

• [Bioperl-l] GMOD Evo Hackathon Open Call for Participation   Robert Buels
• [Bioperl-l] SOAP Eutilities   Mark A. Jensen
• [Bioperl-l] phyloxml and element order   Dave Messina
• [Bioperl-l] clustalw to maf format   shalabh sharma
  • [Bioperl-l] clustalw to maf format   Smithies, Russell
    • [Bioperl-l] clustalw to maf format   shalabh sharma
      • [Bioperl-l] clustalw to maf format   Bernd Web
      • [Bioperl-l] clustalw to maf format   Chris Fields
      • [Bioperl-l] clustalw to maf format   shalabh sharma
      • [Bioperl-l] Getting pileup consensus from BAM files using Bio::DB::Sam   Gowthaman Ramasamy
      • [Bioperl-l] Getting pileup consensus from BAM files using Bio::DB::Sam   Scott Cain
      • [Bioperl-l] Getting pileup consensus from BAM files using Bio::DB::Sam   Lincoln Stein
      • [Bioperl-l] Getting pileup consensus from BAM files using Bio::DB::Sam   Peter
      • [Bioperl-l] Getting pileup consensus from BAM files using Bio::DB::Sam   Gowthaman Ramasamy
      • [Bioperl-l] AlignIO and Gbrowse_syn   Smithies, Russell
      • [Bioperl-l] AlignIO and Gbrowse_syn   Chris Fields
      • [Bioperl-l] AlignIO and Gbrowse_syn   Sheldon McKay
  • [Bioperl-l] clustalw to maf format   Peter
• [Bioperl-l] Pubmed Parsing   chirag matkar
  • [Bioperl-l] Pubmed Parsing   John Anderson
  • [Bioperl-l] Pubmed Parsing   Frank Schwach
• [Bioperl-l] nmica parser   Stefan Kirov
• [Bioperl-l] call for a TreeIO volunteer   Dave Messina
  • [Bioperl-l] call for a TreeIO volunteer   Gregory Jordan
    • [Bioperl-l] call for a TreeIO volunteer   Dave Messina
      • [Bioperl-l] call for a TreeIO volunteer   Chris Fields
• [Bioperl-l] GMOD Europe 2010, 13-16 Sept, Cambridge, UK   Dave Clements
• [Bioperl-l] Wrapper for Picard tools in Bioperl   Abhishek Pratap
  • [Bioperl-l] Wrapper for Picard tools in Bioperl   Smithies, Russell
  • [Bioperl-l] Wrapper for Picard tools in Bioperl   Chris Fields
• [Bioperl-l] MUMmer parser work   Dan Kortschak
  • [Bioperl-l] MUMmer parser work   Chris Fields
    • [Bioperl-l] MUMmer parser work   Dan Kortschak
      • [Bioperl-l] MUMmer parser work   John SJ Anderson
      • [Bioperl-l] MUMmer parser work   Dan Kortschak
      • [Bioperl-l] MUMmer parser work   John Anderson
• [Bioperl-l] Packages retrieving online alignment sequences   Jun Yin
  • [Bioperl-l] Packages retrieving online alignment sequences   Dave Messina
    • [Bioperl-l] Packages retrieving online alignment sequences   Jun Yin
      • [Bioperl-l] Packages retrieving online alignment sequences   Gregory Jordan
      • [Bioperl-l] Packages retrieving online alignment sequences   Chris Fields
      • [Bioperl-l] Packages retrieving online alignment sequences   Gregory Jordan
• [Bioperl-l] BioPerl install issues   DRBowley
  • [Bioperl-l] BioPerl install issues   Kevin Brown
• [Bioperl-l] BioPerl install issues   Lakshmi Kastury
  • [Bioperl-l] BioPerl install issues   Dave Messina
    • [Bioperl-l] BioPerl install issues   Chris Fields
      • [Bioperl-l] BioPerl install issues   George Hartzell
      • [Bioperl-l] BioPerl install issues   Chris Fields
• [Bioperl-l] using HMMER   fayroz
  • [Bioperl-l] using HMMER   Roy Chaudhuri
    • [Bioperl-l] using HMMER   Chris Fields
      • [Bioperl-l] using HMMER   Kai Blin
      • [Bioperl-l] using HMMER   Chris Fields
• [Bioperl-l] bioperl-live, moving Bio->lib/Bio   Chris Fields
  • [Bioperl-l] bioperl-live, moving Bio->lib/Bio   John SJ Anderson
  • [Bioperl-l] bioperl-live, moving Bio->lib/Bio   Mark A. Jensen
• [Bioperl-l] Bio::SeqFeature::SimilarityPair->from_searchResult()?   Douglas Hoen
  • [Bioperl-l] Bio::SeqFeature::SimilarityPair->from_searchResult()?   John SJ Anderson
• [Bioperl-l] About extracting sequence from genewise format result   zhaoy at mail.cbi.pku.edu.cn
• [Bioperl-l] How to store results of searches of translated DNA in SeqFeature::Store database of the original DNA?   Doug
  • [Bioperl-l] How to store results of searches of translated DNA in SeqFeature::Store database of the original DNA?   Doug
    • [Bioperl-l] How to store results of searches of translated DNA in SeqFeature::Store database of the original DNA?   Scott Cain
      • [Bioperl-l] How to store results of searches of translated DNA in SeqFeature::Store database of the original DNA?   Doug
      • [Bioperl-l] How to store results of searches of translated DNA in SeqFeature::Store database of the original DNA?   Chris Fields
      • [Bioperl-l] How to store results of searches of translated DNA in SeqFeature::Store database of the original DNA?   Scott Cain
      • [Bioperl-l] How to store results of searches of translated DNA in SeqFeature::Store database of the original DNA?   Chris Fields
      • [Bioperl-l] How to store results of searches of translated DNA in SeqFeature::Store database of the original DNA?   Douglas Hoen
      • [Bioperl-l] How to store results of searches of translated DNA in SeqFeature::Store database of the original DNA?   Doug
• [Bioperl-l] HMMER3 to GFF3   Doug Hoen
  • [Bioperl-l] HMMER3 to GFF3   Kai Blin
    • [Bioperl-l] HMMER3 to GFF3   Douglas Hoen
• [Bioperl-l] using HMMER   Chris Fields
• [Bioperl-l] Other: Script for editing alignments?   Jason Stajich
• [Bioperl-l] Problem executing bp_genbank2gff3.pl from another perl script   David Breimann
• [Bioperl-l] Bio::LocatableSeq end checking inconsistency   Jun Yin
  • [Bioperl-l] Bio::LocatableSeq end checking inconsistency   Bernd Web
    • [Bioperl-l] Bio::LocatableSeq end checking inconsistency   Jun Yin
• [Bioperl-l] Add sequence feature   Jessica Sun
  • [Bioperl-l] Add sequence feature   Roy Chaudhuri
• [Bioperl-l] Add sequence feature   Jessica Sun
  • [Bioperl-l] Add sequence feature   Roy Chaudhuri
• [Bioperl-l] Add sequence feature   Roy Chaudhuri
  • [Bioperl-l] Add sequence feature   Jessica Sun
    • [Bioperl-l] Add sequence feature   Cook, Malcolm
    • [Bioperl-l] Add sequence feature   Mike Williams
    • [Bioperl-l] Add sequence feature   Kevin Brown
• [Bioperl-l] Fwd: Add sequence feature   Jessica Sun
  • [Bioperl-l] Fwd: Add sequence feature   Cook, Malcolm
• [Bioperl-l] Bug? Features with similar ranges, different IDs are considered overlapping   Chris Fields
  • [Bioperl-l] Bug? Features with similar ranges, different IDs are considered overlapping   Dave Messina
    • [Bioperl-l] Bug? Features with similar ranges, different IDs are considered overlapping   Chris Fields
      • [Bioperl-l] Bug? Features with similar ranges, different IDs are considered overlapping   Dave Messina
      • [Bioperl-l] Bug? Features with similar ranges, different IDs are considered overlapping   Scott Cain
      • [Bioperl-l] Bug? Features with similar ranges, different IDs are considered overlapping   Dave Messina
      • [Bioperl-l] Bug? Features with similar ranges, different IDs are considered overlapping   Chris Fields
      • [Bioperl-l] Bug? Features with similar ranges, different IDs are considered overlapping   Chris Fields
• [Bioperl-l] bp_genbank2gff3.pl error with circular genomes   David Breimann
  • [Bioperl-l] bp_genbank2gff3.pl error with circular genomes   Chris Fields
    • [Bioperl-l] bp_genbank2gff3.pl error with circular genomes   Chris Mungall
      • [Bioperl-l] bp_genbank2gff3.pl error with circular genomes   Chris Fields
      • [Bioperl-l] bp_genbank2gff3.pl error with circular genomes   Chris Fields
      • [Bioperl-l] bp_genbank2gff3.pl error with circular genomes   David Breimann
      • [Bioperl-l] bp_genbank2gff3.pl error with circular genomes   Chris Fields
• [Bioperl-l] Bio::Tools::Primer3 question   Hong Xu
  • [Bioperl-l] Bio::Tools::Primer3 question   Chris Fields
    • [Bioperl-l] Bio::Tools::Primer3 question   Chris Fields
• [Bioperl-l] [RFC] Interolog::Walk   Giuseppe Gallone
  • [Bioperl-l] [RFC] Interolog::Walk   Dave Messina
    • [Bioperl-l] [RFC] Interolog::Walk   Giuseppe Gallone
      • [Bioperl-l] [RFC] Interolog::Walk   Dave Messina
      • [Bioperl-l] [RFC] Interolog::Walk   Giuseppe Gallone
      • [Bioperl-l] [RFC] Interolog::Walk   Dave Messina
      • [Bioperl-l] [RFC] Interolog::Walk   Chris Fields
  • [Bioperl-l] Re: [RFC] Interolog::Walk   Siddhartha Basu
    • [Bioperl-l] [RFC] Interolog::Walk   Giuseppe Gallone
• [Bioperl-l] Bio::Tools::Run::StandAloneBlast.pm - bl2seq question   Caleb Davis
  • [Bioperl-l] Bio::Tools::Run::StandAloneBlast.pm - bl2seq question   Dave Messina
    • [Bioperl-l] Bio::Tools::Run::StandAloneBlast.pm - bl2seq question   Chris Fields
• [Bioperl-l] bioperl-db and postgres8.3 - status query   Dan Kortschak
  • [Bioperl-l] bioperl-db and postgres8.3 - status query   Hilmar Lapp
    • [Bioperl-l] bioperl-db and postgres8.3 - status query   Dan Kortschak
    • [Bioperl-l] bioperl-db and postgres8.3 - status query   Peter
      • [Bioperl-l] bioperl-db and postgres8.3 - status query   Hilmar Lapp
      • [Bioperl-l] bioperl-db and postgres8.3 - status query   Chris Fields
      • [Bioperl-l] bioperl-db and postgres8.3 - status query   Robert Buels
      • [Bioperl-l] Re: bioperl-db and postgres8.3 - status query   Siddhartha Basu
      • [Bioperl-l] bioperl-db and postgres8.3 - status query   Chris Fields
      • [Bioperl-l] Re: bioperl-db and postgres8.3 - status query   Siddhartha Basu
      • [Bioperl-l] bioperl-db and postgres8.3 - status query   Scott Cain
• [Bioperl-l] Why I can't find the perl script "load_seqdatabase.pl" when use biosql database?   xupeng
  • [Bioperl-l] Why I can't find the perl script "load_seqdatabase.pl" when use biosql database?   Hilmar Lapp
    • [Bioperl-l] Why I can't find the perl script "load_seqdatabase.pl" when use biosql database?   Michael Muratet
      • [Bioperl-l] Why I can't find the perl script "load_seqdatabase.pl" when use biosql database?   Hilmar Lapp
      • [Bioperl-l] Why I can't find the perl script "load_seqdatabase.pl" when use biosql database?   Chris Fields
      • [Bioperl-l] Why I can't find the perl script "load_seqdatabase.pl" when use biosql database?   Michael Muratet
• [Bioperl-l] Could I install BioPerl on Windows with the ActivePerl 5.12.1?   han sun
  • [Bioperl-l] Could I install BioPerl on Windows with the ActivePerl 5.12.1?   Christopher Fields
• [Bioperl-l] bioperl-db and postgres8.3 - status query   Hilmar Lapp
• [Bioperl-l] Bug? Features with similar ranges, different IDs are considered overlapping   Dave Messina
• [Bioperl-l] reminder: Aug 25 deadline for GMOD Hackathon application   Robert Buels
• [Bioperl-l] Could I install BioPerl on Windows with the ActivePerl 5.12.1?   Christopher Fields
  • [Bioperl-l] Could I install BioPerl on Windows with the ActivePerl 5.12.1?   Adam Kennedy
    • [Bioperl-l] Could I install BioPerl on Windows with the ActivePerl 5.12.1?   Christopher Fields
• [Bioperl-l] Bio::Tools::Run::StandAloneBlast.pm - bl2seq question   Dave Messina
• [Bioperl-l] Git for the lazy   Dave Messina
  • [Bioperl-l] Git for the lazy   Jessica Sun
• [Bioperl-l] Problem Parsing BLAST output   Ben Saville
  • [Bioperl-l] Problem Parsing BLAST output   Dave Messina
    • [Bioperl-l] Problem Parsing BLAST output   Ben Saville
      • [Bioperl-l] Problem Parsing BLAST output   Chris Fields
• [Bioperl-l] bp_seqfeature_load.pl fails on Mac os. Please help.   Minh Bui
  • [Bioperl-l] bp_seqfeature_load.pl fails on Mac os. Please help.   Adam Witney
    • [Bioperl-l] bp_seqfeature_load.pl fails on Mac os. Please help.   Minh Bui
      • [Bioperl-l] bp_seqfeature_load.pl fails on Mac os. Please help.   Scott Cain
• [Bioperl-l] clustalw.exe   keiko
  • [Bioperl-l] clustalw.exe   Chris Fields
• [Bioperl-l] Enquiry on Bio::DB::Taxonomy   Jason Stajich
• [Bioperl-l] a problem when using the Bioperl modules   Jason Stajich
• [Bioperl-l] a problem when using the Bioperl modules   Jason Stajich
• [Bioperl-l] a problem when using the Bio::DB::Fasta   Guifeng Wei
  • [Bioperl-l] a problem when using the Bio::DB::Fasta   Florent Angly
  • [Bioperl-l] a problem when using the Bio::DB::Fasta   Guifeng Wei
    • [Bioperl-l] a problem when using the Bio::DB::Fasta   Peter
    • [Bioperl-l] a problem when using the Bio::DB::Fasta   Chris Fields
• [Bioperl-l] a problem when using the Bio::DB::Fasta   Chris Fields
• [Bioperl-l] FYI: interesting stuff in BLAST 2.2.24 release announcement   Chris Fields
  • [Bioperl-l] FYI: interesting stuff in BLAST 2.2.24 release announcement   Dave Messina
    • [Bioperl-l] FYI: interesting stuff in BLAST 2.2.24 release announcement   Chris Fields
      • [Bioperl-l] FYI: interesting stuff in BLAST 2.2.24 release announcement   Dave Messina
• [Bioperl-l] Enquiry on gi_taxid_nucl.dmp.gz   Jason Stajich
  • [Bioperl-l] Enquiry on gi_taxid_nucl.dmp.gz   Roy Chaudhuri
• [Bioperl-l] bpfetch.pl   Aanes Håvard
• [Bioperl-l] Bio::Tools:GFF to get DNA sequences...   kanmani
• [Bioperl-l] getting DNA sequence for exon features from GFF   kanmani radha
  • [Bioperl-l] getting DNA sequence for exon features from GFF   Dave Messina
    • [Bioperl-l] getting DNA sequence for exon features from GFF   Peter
      • [Bioperl-l] getting DNA sequence for exon features from GFF   Dave Messina
      • [Bioperl-l] getting DNA sequence for exon features from GFF   Dave Messina
      • [Bioperl-l] getting DNA sequence for exon features from GFF   Chris Fields
  • [Bioperl-l] getting DNA sequence for exon features from GFF   Frank Schwach
    • [Bioperl-l] getting DNA sequence for exon features from GFF   Chris Fields
      • [Bioperl-l] getting DNA sequence for exon features from GFF   kanmani radha
      • [Bioperl-l] getting DNA sequence for exon features from GFF   Chris Fields
      • [Bioperl-l] getting DNA sequence for exon features from GFF   kanmani radha
      • [Bioperl-l] getting DNA sequence for exon features from GFF   kanmani radha
• [Bioperl-l] Help in algorithm Bio::Structure::IO::pdb   Rafael Lucas
• [Bioperl-l] How to convert SFF into Fastq   Indraniel
• [Bioperl-l] standaloneblastplus blastn crash   J. Christopher Ellis
  • [Bioperl-l] standaloneblastplus blastn crash   Dave Messina
• [Bioperl-l] fasta header replace   odclerck
  • [Bioperl-l] fasta header replace   Frank Schwach
• [Bioperl-l] Taxonomy DB problem   J. Christopher Ellis
  • [Bioperl-l] Taxonomy DB problem   Chris Fields
• [Bioperl-l] help in algorithm Bio::Structure::IO::pdb   Rafael Lucas
• [Bioperl-l] New CPAN Release - Bio::Homology::InterologWalk - A Perl Module to retrieve putative PPIs through Interologs   Giuseppe Gallone
• [Bioperl-l] Taxonomy DB problem   J. Christopher Ellis
• [Bioperl-l] Taxonomy DB problem   Chris Fields

Last message date: Tue Aug 31 11:01:59 EDT 2010
Archived on: Tue Aug 31 11:02:34 EDT 2010

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