[Bioperl-l] extract protein sequence

Chris Fields cjfields at illinois.edu
Tue Dec 7 08:04:41 EST 2010


On Dec 6, 2010, at 11:29 PM, C.J. wrote:

> Dear all,
> 
> I have download many polyprotein sequences from Genbank.
> As the polyprotein sequence contains several mature peptides.
> I want to extract my target mature peptide from these sequences.
> Anyone would be kind to tell me any model in Bioperl can do this?
> Thanks.
> 
> -- 
> Regards!
> C.J.

You'll need to provide some example accessions to look at.  My guess is, if the mature peptide is described as a feature, then yes.

chris





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