[Bioperl-l] OX lines of EMBL files [patch included]

Chris Fields cjfields at illinois.edu
Wed Dec 22 22:05:24 EST 2010

On Dec 21, 2010, at 6:09 AM, Jacob Bunk Nielsen wrote:

> Hi
> I have noticed that BioPerl does not write OX lines with NCBI TaxIDs in.
> I'd like this feature even though the official way seems to have a a
> source feature with a db_xref to a 'taxon:(\d+)' for this sort of thing.
> I've found and example of an OX line being used for a TaxID at
> ftp://ftp.ebi.ac.uk/pub/databases/embl/cds/README.txt
> Please find attached a patch for reading and writing NCBI TaxIDs to EMBL
> files and a test that verifies that the TaxID will roundtrip being
> written and then read.
> Best regards
> Jacob


Patch was committed:


Thanks for letting us know about this!


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