[Bioperl-l] Mapping Blast results

Scott Cain scott at scottcain.net
Tue Feb 2 13:34:29 EST 2010

Hi Shalabh,

When you say it's not working, what do you mean?  Presumably, you
could write a script that uses Bio::DB::SeqFeature::Store if speed is
the problem, but if you wanted to go that far, your time would
probably be better spent installing GBrowse.


On Tue, Feb 2, 2010 at 10:16 AM, shalabh sharma
<shalabh.sharma7 at gmail.com> wrote:
> Hi,
>    I am trying to map blast results on a gene. I am using Bio::Graphics
>    http://bioperl.org/wiki/HOWTO:Graphics
> This is working fine for small blast files but not for large blast file with
> lot of hits. Is there any way i can use this for large blast files?
> Thanks
> Shalabh
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Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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