[Bioperl-l] After Checkout of Bioperl-live version doesn't seem tochange

Mark A. Jensen maj at fortinbras.us
Wed Feb 3 12:50:20 EST 2010

Presumably your pwd was
when you did the checkout?
----- Original Message ----- 
From: "Lacey Sanderson" <laceyanne_sanderson at shaw.ca>
To: <bioperl-l at lists.open-bio.org>
Sent: Wednesday, February 03, 2010 10:32 AM
Subject: [Bioperl-l] After Checkout of Bioperl-live version doesn't seem 

> Hi,
> I just checked out bioperl-live from svn as follows
> $ sudo svn co svn://code.open-bio.org/bioperl/bioperl-live/trunk  bioperl-live
> $ echo 'export PERL5LIB="/usr/local/share/applications/Bioperl/bioperl- 
> live:$PERL5LIB"  #adds path of bioperl-live to PERL5LIB' >> ~/.profile
> I then restarted by shell and checked the version using
> $ perl -MBio::Perl -le 'print Bio::Perl->VERSION;'
> Which returned 1.006... I am sure this is the version of bioperl I had 
> previously installed and not the new one I just checked out. Is there 
> something else I need to do to tell my system to disregard the old  bioperl 
> and instead use bioperl-live?
> I had installed BioPerl earlier using the GMOD GBrowse netinstaller  although 
> I can't seem to locate where it was installed. Will this  effect anything? If 
> so, how would I go about uninstalling it (I'm a  little new to Linux)...
> By the way I am running Ubuntu Intrepid
> Thanks!
> Lacey
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> Bioperl-l at lists.open-bio.org
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