[Bioperl-l] After Checkout of Bioperl-live version doesn't seem tochange
laceyanne_sanderson at shaw.ca
Wed Feb 3 12:58:09 EST 2010
Yes, Sorry I forgot to include that. I checked and the bioperl-live
checkout is where I told export it would be (ie: in /usr/local/share/
On 3-Feb-10, at 11:50 AM, Mark A. Jensen wrote:
> Presumably your pwd was
> when you did the checkout?
> ----- Original Message ----- From: "Lacey Sanderson" <laceyanne_sanderson at shaw.ca
> To: <bioperl-l at lists.open-bio.org>
> Sent: Wednesday, February 03, 2010 10:32 AM
> Subject: [Bioperl-l] After Checkout of Bioperl-live version doesn't
> seem tochange
>> I just checked out bioperl-live from svn as follows
>> $ sudo svn co svn://code.open-bio.org/bioperl/bioperl-live/trunk
>> $ echo 'export PERL5LIB="/usr/local/share/applications/Bioperl/
>> bioperl- live:$PERL5LIB" #adds path of bioperl-live to PERL5LIB'
>> >> ~/.profile
>> I then restarted by shell and checked the version using
>> $ perl -MBio::Perl -le 'print Bio::Perl->VERSION;'
>> Which returned 1.006... I am sure this is the version of bioperl I
>> had previously installed and not the new one I just checked out. Is
>> there something else I need to do to tell my system to disregard
>> the old bioperl and instead use bioperl-live?
>> I had installed BioPerl earlier using the GMOD GBrowse
>> netinstaller although I can't seem to locate where it was
>> installed. Will this effect anything? If so, how would I go about
>> uninstalling it (I'm a little new to Linux)...
>> By the way I am running Ubuntu Intrepid
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
Pulse Crop Breeding and Genetics
Department of Plant Sciences
University of Saskatchewan.
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