[Bioperl-l] After Checkout of Bioperl-live version doesn't seem tochange

Lacey Sanderson laceyanne_sanderson at shaw.ca
Wed Feb 3 12:58:09 EST 2010

Yes, Sorry I forgot to include that. I checked and the bioperl-live  
checkout is where I told export it would be (ie: in /usr/local/share/ 


On 3-Feb-10, at 11:50 AM, Mark A. Jensen wrote:

> Presumably your pwd was
> /usr/local/share/applications/Bioperl
> when you did the checkout?
> ----- Original Message ----- From: "Lacey Sanderson" <laceyanne_sanderson at shaw.ca 
> >
> To: <bioperl-l at lists.open-bio.org>
> Sent: Wednesday, February 03, 2010 10:32 AM
> Subject: [Bioperl-l] After Checkout of Bioperl-live version doesn't  
> seem tochange
>> Hi,
>> I just checked out bioperl-live from svn as follows
>> $ sudo svn co svn://code.open-bio.org/bioperl/bioperl-live/trunk   
>> bioperl-live
>> $ echo 'export PERL5LIB="/usr/local/share/applications/Bioperl/ 
>> bioperl- live:$PERL5LIB"  #adds path of bioperl-live to PERL5LIB'  
>> >> ~/.profile
>> I then restarted by shell and checked the version using
>> $ perl -MBio::Perl -le 'print Bio::Perl->VERSION;'
>> Which returned 1.006... I am sure this is the version of bioperl I  
>> had previously installed and not the new one I just checked out. Is  
>> there something else I need to do to tell my system to disregard  
>> the old  bioperl and instead use bioperl-live?
>> I had installed BioPerl earlier using the GMOD GBrowse  
>> netinstaller  although I can't seem to locate where it was  
>> installed. Will this  effect anything? If so, how would I go about  
>> uninstalling it (I'm a  little new to Linux)...
>> By the way I am running Ubuntu Intrepid
>> Thanks!
>> Lacey
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Lacey Sanderson
Pulse Crop Breeding and Genetics
Department of Plant Sciences
University of Saskatchewan.

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