[Bioperl-l] Refseq Version

Smithies, Russell Russell.Smithies at agresearch.co.nz
Thu Feb 4 18:39:55 EST 2010

If you have access to the blast database, use fastacmd -I -d databasename
Otherwise, it's usually at the bottom of your blast result.


> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of shalu sharma
> Sent: Friday, 5 February 2010 11:02 a.m.
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] Refseq Version
> Hi All,
>       This is not a bioperl query.
> Is there any way to check refseq version (release). Actually i am using
> some
> server to blast my sequences (blastall) against refseq. Is there any way i
> can get the version information on the refseq database (from the blast
> file
> or directly from the database)?
> Thanks
> Shalu
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
sender immediately.

More information about the Bioperl-l mailing list