[Bioperl-l] Aligning Reads

shalu sharma sharmashalu.bio at gmail.com
Fri Feb 5 14:21:36 EST 2010

Hi All,
            Is there any program available which can align reads (200-400bp
in fasta format) against a reference sequence and the whole alignment can be
viewed graphically.
I tried bowtie but i think it only takes fastaq format.


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