[Bioperl-l] Aligning Reads

Thomas Källman thomas.kallman at ebc.uu.se
Fri Feb 5 16:23:50 EST 2010

Hi Shalu,

Not really related to bioperl, but you can find a nice list of  
software aligning short read data at http://seqanswers.com/forums/showthread.php?t=43

On Feb 5, 2010, at 8:21 PM, shalu sharma wrote:

> Hi All,
>            Is there any program available which can align reads  
> (200-400bp
> in fasta format) against a reference sequence and the whole  
> alignment can be
> viewed graphically.
> I tried bowtie but i think it only takes fastaq format.
> Thanks
> shalu
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