[Bioperl-l] Blastxml parser not parsing multiple hits

ThirumalaiswamySekhar, Arvind (A) asekhar at dow.com
Sat Feb 13 11:31:28 EST 2010

Sure Chris

I will. 

-----Original Message-----
From: Chris Fields [mailto:cjfields at illinois.edu] 
Sent: Friday, February 12, 2010 5:25 PM
To: ThirumalaiswamySekhar, Arvind (A)
Cc: bioperl-l at bioperl.org
Subject: Re: [Bioperl-l] Blastxml parser not parsing multiple hits

This sounds like a bug, but I believe there are tests in the test suite
that cover this.  So, you'll definitely have to be more explicit.  Can
you submit a bug report, containing code and an example file?


On Feb 12, 2010, at 3:25 PM, ThirumalaiswamySekhar, Arvind (A) wrote:

> Hello
> I have been using the blastxml parser and based on what I see as
> the parser does not move the result object correctly when there are
> muliple sequence results in one file.
> All hits and their hsps always appear with the same query name which
> should not be the case. Is this a bug?
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

More information about the Bioperl-l mailing list