[Bioperl-l] Bio::Index::Fastq support for gzipped files

Peter biopython at maubp.freeserve.co.uk
Tue Feb 23 12:01:16 EST 2010

On Tue, Feb 23, 2010 at 4:51 PM, Albert Vilella <avilella at gmail.com> wrote:
> Hi,
> Maybe already answered somewhere but, do we have support for
> gzipped fasta/fastq files?
> Google tells me biopython does, but I couldn't guess for bioperl...

To clarify, we've discussed this on the Biopython mailing list, and
Renato Alves and I have been exploring possible implementation
on git branches, but we don't yet have indexing of gzipped files on
the trunk. But it would be nice :)


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