[Bioperl-l] Bio::Index::Fastq support for gzipped files
avilella at gmail.com
Wed Feb 24 03:48:59 EST 2010
aaah, so we can still be first in bioperl ;-)
On Tue, Feb 23, 2010 at 5:01 PM, Peter <biopython at maubp.freeserve.co.uk> wrote:
> On Tue, Feb 23, 2010 at 4:51 PM, Albert Vilella <avilella at gmail.com> wrote:
>> Maybe already answered somewhere but, do we have support for
>> gzipped fasta/fastq files?
>> Google tells me biopython does, but I couldn't guess for bioperl...
> To clarify, we've discussed this on the Biopython mailing list, and
> Renato Alves and I have been exploring possible implementation
> on git branches, but we don't yet have indexing of gzipped files on
> the trunk. But it would be nice :)
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