[Bioperl-l] sim4cc vs sim4

Jason Stajich jason at bioperl.org
Wed Feb 24 14:50:32 EST 2010

sending an example can help -- I guess the formats are different enough 
that the parser doesn't work.  Why people don't just generate a GFF or 
simple tab format when they write a new tool, I don't know....


Jeff S Kittrell wrote:
> Has anyone used the sim4 file parser on a sim4cc? When I parse the 
> file with SearchIO(-format => 'sim4') or Bio::Tools::Sim4::Results the 
> query string returns a null. I assume there is some slight difference 
> between the two file formats? Any help is appreciated.
> Jeff
> ------------------------------------------------------------------------
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

More information about the Bioperl-l mailing list