[Bioperl-l] Bioperl newbie Bio::Tools::Sim4::Results question

Jason Stajich jason at bioperl.org
Wed Feb 24 14:52:08 EST 2010

Do you want the sequence name or the sequence itsself?
I don't think the sequence is in the report, it is just locations of the 
exons in the report.

You can use Bio::DB::Fasta to index your genome and EST db and then pull 
out the sequence locations with code like:
  $db->seq(NAME, START => END)

Jeff S Kittrell wrote:
> Hello,
> I new at bioperl so sorry if this question is mundane. I am parsing a 
> sim4 file with
> Bio::Tools::Sim4::Results and can not for the life of me figure out 
> how to extract the query or
> hit sequence.
> thanks for your help,
> jeff kittrell
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