[Bioperl-l] indexed fastq files

Chris Fields cjfields at illinois.edu
Mon Jan 4 16:59:50 EST 2010


Bio::Index::Fastq, maybe?  To tell the truth, I haven't tried it since we refactored FASTQ parsing, so let us know if it doesn't work.

chris

On Jan 4, 2010, at 2:00 PM, Albert Vilella wrote:

> Hi all,
> 
> What is the best way to index fastq files, so that once clustered, I
> can provide a list of seq_ids and get
> them back in fastq format from the indexed db?
> 
> Cheers,
> 
> Albert.
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