[Bioperl-l] BioPerl 1.6 and parsing multiple EMBL records
biopython at maubp.freeserve.co.uk
Mon Jan 11 10:17:37 EST 2010
On Mon, Jan 11, 2010 at 3:04 PM, Mark A. Jensen <maj at fortinbras.us> wrote:
> Hi Peter, I found the issue-- there are no SQ lines in the data, and having
> them is a key stop condition in the parser (line 438 embl.pm).
> We evidently need to be more liberal in what we accept, even as we are
> strict in what we emit. Could you make a bug report?
> thanks for the heads-up--
These are EMBL contig records, so they don't have SQ lines,
but instead CO lines.
More information about the Bioperl-l