[Bioperl-l] Blast to Clustalw Format

Mark A. Jensen maj at fortinbras.us
Wed Jan 13 13:44:36 EST 2010


Marcelo-
Yes-- look at the code snip at
http://www.bioperl.org/wiki/HOWTO:SearchIO#Using_SearchIO
combined with the snip at 
http://www.bioperl.org/wiki/HOWTO:SearchIO#Using_the_methods
(using -format => 'clustalw')
cheers MAJ
----- Original Message ----- 
From: "Marcelo Iwata" <marcelo011982 at gmail.com>
To: <bioperl-l at lists.open-bio.org>
Sent: Wednesday, January 13, 2010 1:12 PM
Subject: [Bioperl-l] Blast to Clustalw Format


> Hi..
> I have an simple Blast result, such as blastn.
> Is there an  scrip  to transform such result to Clustalw format in Bioperl
> ?(.aln)
> 
> Thanx for any help.
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> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
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