[Bioperl-l] Parsing PSI-BLAST results with SearchIO

NickJD nickjd at gmail.com
Wed Jan 13 08:18:12 EST 2010


I am trying to parse PSI-BLAST results using SearchIO and some very
basic code just to read the number of hits, number of hsps, etc.  I
have done 10 rounds on 1 input sequence and parsed it but it seems to
treat each round as a separate result, so round/iteration is always 1
and new_hits its always the total list not the ones that are new to
that round.  Does anyone have any experience of this?

Thanks,

Nick


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