[Bioperl-l] Reciprocal best hits using Bioperl?

Chris Fields cjfields at illinois.edu
Sun Jan 17 12:45:08 EST 2010


It's probably not best to use BioPerl directly for this.  Have you tried OrthoMCL, or InParanoid? 

chris

On Jan 17, 2010, at 10:02 AM, Bhakti Dwivedi wrote:

> Hi
> 
> Is there a Bio-perl module to parse the reciprocal best hits (query1-> hit1
> && hit1 -> query1)  from a blast table report?
> 
> Thanks
> 
> BD
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