[Bioperl-l] using Bio::DB::GFF for aggregation

Dan Kortschak dan.kortschak at adelaide.edu.au
Wed Jan 20 16:16:39 EST 2010


Thanks for that, I'll look into those. BEDtools looks like what I want.

cheers
Dan

On Wed, 2010-01-20 at 07:59 -0500, Aaron Mackey wrote:
> I would advise using BEDtools or the R IRanges package for this kind
> of aggregation/merging work, rather than trying to reinvent this
> particular wheel.
> 
> -Aaron






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