[Bioperl-l] Bio::BroodComb - RFC

Jay Hannah jay at jays.net
Fri Jan 22 13:30:57 EST 2010


On Jan 21, 2010, at 10:31 PM, Chris Fields wrote:
> Did you want to release it to CPAN?  I'll take a closer look at the docs to get an idea of what you are doing with it, but from my perspective I can see this becoming a nice general use tool akin to Bio::Perl, maybe a bit more lightweight.

Yes, I was thinking I would. No one has (yet) told me it's the worst idea ever, so I'm feeling encouraged.  :)

Given smallish inputs / databases (up to a few million rows) where some lightweight schema + SQLite + BioPerl can get the job done, it's nice to have a little easy-to-run toolbox. New tables and Roles bolt on easily, so I'll be adding them as they surface at $work[1]. 

Thanks for your interest.   :)

Jay Hannah
http://github.com/jhannah/bio-broodcomb
http://clab.ist.unomaha.edu/CLAB/index.php/User:Jhannah




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