[Bioperl-l] HTMLResultWriter

Dave Messina David.Messina at sbc.su.se
Mon Jan 25 16:09:24 EST 2010

> my _$blast_report _=qx/$blast -p blastp -d $database -i $query -e $E_value -b 20000 -o $outputfilenameB/;

> while( my $result = _$blast_report_->next_result ) { # get a result from Bio::SearchIO parsing or build it up in memory

_$blast_report_ is not a valid variable name, as far as I know. Plus there's a space between report and the final '_' in the first of the above two lines.

Does this code compile?


More information about the Bioperl-l mailing list