[Bioperl-l] No error message is given for a warning (EUtilities)

Chris Fields cjfields at illinois.edu
Sun Jul 11 20:49:37 EDT 2010


On Jul 11, 2010, at 7:04 PM, Peng Yu wrote:

> On Sun, Jul 11, 2010 at 4:16 PM, Chris Fields <cjfields at illinois.edu> wrote:
>> 
>> On Jul 11, 2010, at 2:54 PM, Peng Yu wrote:
>> 
>>> ...
>>> Is there a way to suppress such error and warning message as they are
>>> not interesting to me? (As I can always check how many pubmed ids
>>> returned to determine if the search results anything).
>>> 
>>> --
>>> Regards,
>>> Peng
>> 
>> Setting -verbose to -1 should work.
> 
> I don't see such an option in perldoc Bio::DB::EUtilities. Would you
> please let me know where it is documented? In fact, I don't see the
> document for new() in Bio::DB::EUtilities. Would you please add this
> to the document? Thank you!
> 
> -- 
> Regards,
> Peng

verbose() is a Bio::Root::Root/RootI method (all BioPerl classes inherit it), so that's the place to look.  As for new(), yes I can work on that.

chris


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